001/* 002 AUTOMATICALLY GENERATED BY jTemp FROM 003 /Users/jsh2/Work/openimaj/target/checkout/core/core-feature/src/main/jtemp/org/openimaj/feature/#T#FVComparison.jtemp 004*/ 005/** 006 * Copyright (c) 2011, The University of Southampton and the individual contributors. 007 * All rights reserved. 008 * 009 * Redistribution and use in source and binary forms, with or without modification, 010 * are permitted provided that the following conditions are met: 011 * 012 * * Redistributions of source code must retain the above copyright notice, 013 * this list of conditions and the following disclaimer. 014 * 015 * * Redistributions in binary form must reproduce the above copyright notice, 016 * this list of conditions and the following disclaimer in the documentation 017 * and/or other materials provided with the distribution. 018 * 019 * * Neither the name of the University of Southampton nor the names of its 020 * contributors may be used to endorse or promote products derived from this 021 * software without specific prior written permission. 022 * 023 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 024 * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 025 * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE 026 * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR 027 * ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES 028 * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; 029 * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON 030 * ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT 031 * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 032 * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 033 */ 034package org.openimaj.feature; 035 036import gnu.trove.set.hash.TShortHashSet; 037 038import org.openimaj.math.util.distance.HammingUtils; 039 040/** 041 * Comparison/distance methods for ShortFV objects. 042 * 043 * @author Jonathon Hare (jsh2@ecs.soton.ac.uk) 044 */ 045public enum ShortFVComparison implements ShortFVComparator { 046 /** 047 * Euclidean distance 048 * d(H1,H2) = Math.sqrt( sumI( (H1(I)-H2(I))^2 ) ) 049 */ 050 EUCLIDEAN(true) { 051 @Override 052 public double compare(final short[] h1, final short[] h2) { 053 if (h1.length != h2.length) 054 throw new IllegalArgumentException("Vectors have differing lengths"); 055 056 double d = 0; 057 058 for (int i=0; i<h1.length; i++) { 059 double diff = (h1[i] - h2[i]); 060 d += (diff * diff); 061 } 062 063 return Math.sqrt(d); 064 } 065 }, 066 /** 067 * Sum-square distance 068 * d(H1,H2) = sumI( (H1(I)-H2(I))^2 ) 069 */ 070 SUM_SQUARE(true) { 071 @Override 072 public double compare(final short[] h1, final short[] h2) { 073 if (h1.length != h2.length) 074 throw new IllegalArgumentException("Vectors have differing lengths"); 075 076 double d = 0; 077 078 for (int i=0; i<h1.length; i++) { 079 double diff = (h1[i] - h2[i]); 080 d += (diff * diff); 081 } 082 083 return d; 084 } 085 }, 086 /** 087 * Correlation 088 * 089 * s(H1,H2) = sumI( H'1(I) * H'2(I) ) / sqrt( sumI[H'1(I)2]^2 * sumI[H'2(I)^2] ) 090 * where 091 * H'k(I) = Hk(I) - (1/N) * sumJ( Hk(J) ); N=number of FeatureVector bins 092 * 093 */ 094 CORRELATION(false) { 095 @Override 096 public double compare(final short[] h1, final short[] h2) { 097 if (h1.length != h2.length) 098 throw new IllegalArgumentException("Vectors have differing lengths"); 099 100 double N = h1.length; 101 double SH1=0, SH2=0; 102 103 for (int i=0; i<N; i++) { 104 SH1 += h1[i]; 105 SH2 += h2[i]; 106 } 107 SH1 /= N; 108 SH2 /= N; 109 110 double d = 0; 111 double SH1S = 0; 112 double SH2S = 0; 113 114 for (int i=0; i<N; i++) { 115 double h1prime = h1[i] - SH1; 116 double h2prime = h2[i] - SH2; 117 118 d += (h1prime * h2prime); 119 SH1S += (h1prime * h1prime); 120 SH2S += (h2prime * h2prime); 121 } 122 123 if (d==0) return 0; 124 125 return d / Math.sqrt(SH1S * SH2S); 126 } 127 }, 128 /** 129 * Chi-squared distance 130 * d(H1,H2) = 0.5 * sumI[(H1(I)-H2(I))^2 / (H1(I)+H2(I))] 131 */ 132 CHI_SQUARE(true) { 133 @Override 134 public double compare(final short[] h1, final short[] h2) { 135 if (h1.length != h2.length) 136 throw new IllegalArgumentException("Vectors have differing lengths"); 137 138 double d = 0; 139 140 for (int i=0; i<h1.length; i++) { 141 double a = h1[i] - h2[i]; 142 double b = h1[i] + h2[i]; 143 144 if (Math.abs(b) > 0) d += a*a/b; 145 } 146 147 return d / 2; 148 } 149 }, 150 /** 151 * Histogram intersection 152 * s(H1,H2) = sumI( min(H1(I), H2(I)) ) 153 */ 154 INTERSECTION(false) { 155 @Override 156 public double compare(final short[] h1, final short[] h2) { 157 if (h1.length != h2.length) 158 throw new IllegalArgumentException("Vectors have differing lengths"); 159 160 double d = 0; 161 162 for (int i=0; i<h1.length; i++) { 163 d += Math.min(h1[i], h2[i]); 164 } 165 166 return d; 167 } 168 }, 169 /** 170 * Bhattacharyya distance 171 * d(H1,H2) = sqrt( 1 - (1 / sqrt(sumI(H1(I)) * sumI(H2(I))) ) * sumI( sqrt(H1(I) * H2(I)) ) ) 172 */ 173 BHATTACHARYYA(true) { 174 @Override 175 public double compare(final short[] h1, final short[] h2) { 176 if (h1.length != h2.length) 177 throw new IllegalArgumentException("Vectors have differing lengths"); 178 179 final int N = h1.length; 180 double SH1 = 0; 181 double SH2 = 0; 182 double d = 0; 183 for (int i=0; i<N; i++) { 184 SH1 += h1[i]; 185 SH2 += h2[i]; 186 d += Math.sqrt(h1[i] * h2[i]); 187 } 188 189 double den = SH1 * SH2; 190 if (den == 0) return 1; 191 192 d /= Math.sqrt(den); 193 194 return Math.sqrt(1.0 - d); 195 } 196 }, 197 /** 198 * Hamming Distance 199 * d(H1,H2) = sumI(H1(I) == H2(I) ? 1 : 0) 200 */ 201 HAMMING(true) { 202 @Override 203 public double compare(final short[] h1, final short[] h2) { 204 if (h1.length != h2.length) 205 throw new IllegalArgumentException("Vectors have differing lengths"); 206 207 int d = 0; 208 209 for (int i=0; i<h1.length; i++) 210 if (h1[i] != h2[i]) d++; 211 212 return d; 213 } 214 }, 215 /** 216 * Hamming Distance for packed bit strings 217 * d(H1,H2) = sumI(H1(I) == H2(I) ? 1 : 0) 218 */ 219 PACKED_HAMMING(true) { 220 @Override 221 public double compare(final short[] h1, final short[] h2) { 222 if (h1.length != h2.length) 223 throw new IllegalArgumentException("Vectors have differing lengths"); 224 225 int d = 0; 226 227 for (int i=0; i<h1.length; i++) { 228 d += HammingUtils.packedHamming(h1[i], h2[i]); 229 } 230 231 return d; 232 } 233 }, 234 /** 235 * City-block (L1) distance 236 * d(H1,H2) = sumI( abs(H1(I)-H2(I)) ) 237 */ 238 CITY_BLOCK(true) { 239 @Override 240 public double compare(final short[] h1, final short[] h2) { 241 if (h1.length != h2.length) 242 throw new IllegalArgumentException("Vectors have differing lengths"); 243 244 double d = 0; 245 246 for (int i=0; i<h1.length; i++) { 247 d += Math.abs(h1[i] - h2[i]); 248 } 249 250 return d; 251 } 252 }, 253 /** 254 * Cosine similarity (sim of 1 means identical) 255 * s(H1,H2)=sumI(H1(I) * H2(I))) / (sumI(H1(I)^2) sumI(H2(I)^2)) 256 */ 257 COSINE_SIM(false) { 258 @Override 259 public double compare(final short[] h1, final short[] h2) { 260 if (h1.length != h2.length) 261 throw new IllegalArgumentException("Vectors have differing lengths"); 262 263 double h12 = 0; 264 double h11 = 0; 265 double h22 = 0; 266 267 for (int i=0; i<h1.length; i++) { 268 h12 += h1[i] * h2[i]; 269 h11 += h1[i] * h1[i]; 270 h22 += h2[i] * h2[i]; 271 } 272 273 return h12 / (Math.sqrt(h11) * Math.sqrt(h22)); 274 } 275 }, 276 /** 277 * Cosine distance (-COSINE_SIM) 278 */ 279 COSINE_DIST(true) { 280 @Override 281 public double compare(final short[] h1, final short[] h2) { 282 return -1 * COSINE_SIM.compare(h1, h2); 283 } 284 }, 285 /** 286 * The arccosine of the cosine similarity 287 */ 288 ARCCOS(true) { 289 @Override 290 public double compare(final short[] h1, final short[] h2) { 291 return Math.acos( COSINE_SIM.compare(h1, h2) ); 292 } 293 }, 294 /** 295 * The symmetric Kullback-Leibler divergence. Vectors must only contain 296 * positive values; internally they will be converted to double arrays 297 * and normalised to sum to unit length. 298 */ 299 SYMMETRIC_KL_DIVERGENCE(true) { 300 @Override 301 public double compare(final short[] h1, final short[] h2) { 302 if (h1.length != h2.length) 303 throw new IllegalArgumentException("Vectors have differing lengths"); 304 305 double sum1 = 0; 306 double sum2 = 0; 307 for (int i=0; i<h1.length; i++) { 308 sum1 += h1[i]; 309 sum2 += h2[i]; 310 } 311 312 double d = 0; 313 for (int i=0; i<h1.length; i++) { 314 double h1n = h1[i] / sum1; 315 double h2n = h2[i] / sum2; 316 317 double q1 = h1n / h2n; 318 double q2 = h2n / h1n; 319 320 if (h1n != 0) d += (h1n * Math.log(q1) / Math.log(2)); 321 if (h2n != 0) d += (h2n * Math.log(q2) / Math.log(2)); 322 } 323 324 return d / 2.0; 325 } 326 }, 327 /** 328 * Jaccard distance. Converts each vector to a set 329 * for comparison. 330 */ 331 JACCARD_DISTANCE(true) { 332 @Override 333 public double compare(final short[] h1, final short[] h2) { 334 TShortHashSet union = new TShortHashSet(h1); 335 union.addAll(h2); 336 337 TShortHashSet intersection = new TShortHashSet(h1); 338 intersection.retainAll(h2.clone()); //retainAll sorts the input, so we need to make a copy 339 340 return 1.0 - (((double)intersection.size()) / (double)union.size()); 341 } 342 }, 343 /** 344 * Inner product 345 * s(H1,H2)=sumI(H1(I) * H2(I)) 346 */ 347 INNER_PRODUCT(false) { 348 @Override 349 public double compare(final short[] h1, final short[] h2) { 350 if (h1.length != h2.length) 351 throw new IllegalArgumentException("Vectors have differing lengths"); 352 353 double h12 = 0; 354 355 for (int i=0; i<h1.length; i++) { 356 h12 += h1[i] * h2[i]; 357 } 358 359 return h12; 360 } 361 } 362 ; 363 364 private boolean isDistance; 365 ShortFVComparison(boolean isDistance) { 366 this.isDistance = isDistance; 367 } 368 369 @Override 370 public boolean isDistance() { 371 return isDistance; 372 } 373 374 @Override 375 public double compare(ShortFV h1, ShortFV h2) { 376 return compare(h1.values, h2.values); 377 } 378 379 /** 380 * Compare two feature vectors in the form of native arrays, 381 * returning a score or distance. 382 * 383 * @param h1 the first feature array 384 * @param h2 the second feature array 385 * @return a score or distance 386 */ 387 @Override 388 public abstract double compare(short[] h1, short[] h2); 389}