001/**
002 * Copyright (c) 2011, The University of Southampton and the individual contributors.
003 * All rights reserved.
004 *
005 * Redistribution and use in source and binary forms, with or without modification,
006 * are permitted provided that the following conditions are met:
007 *
008 *   *  Redistributions of source code must retain the above copyright notice,
009 *      this list of conditions and the following disclaimer.
010 *
011 *   *  Redistributions in binary form must reproduce the above copyright notice,
012 *      this list of conditions and the following disclaimer in the documentation
013 *      and/or other materials provided with the distribution.
014 *
015 *   *  Neither the name of the University of Southampton nor the names of its
016 *      contributors may be used to endorse or promote products derived from this
017 *      software without specific prior written permission.
018 *
019 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
020 * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
021 * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
022 * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
023 * ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
024 * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
025 * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
026 * ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
027 * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
028 * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
029 */
030package org.openimaj.image.pixel.statistics;
031
032import org.openimaj.feature.FeatureVectorProvider;
033import org.openimaj.image.MBFImage;
034import org.openimaj.math.statistics.distribution.MultidimensionalHistogram;
035import org.openimaj.util.pair.Pair;
036
037/**
038 * A multidimensional histogram calculated from image pixels (assumes image is
039 * in 0-1 range)
040 * 
041 * @author Jonathon Hare (jsh2@ecs.soton.ac.uk)
042 * 
043 */
044public class HistogramModel extends AbstractPixelStatisticsModel
045                implements
046                FeatureVectorProvider<MultidimensionalHistogram>
047{
048        private static final long serialVersionUID = 1L;
049
050        /**
051         * The histogram data
052         */
053        public MultidimensionalHistogram histogram;
054
055        /**
056         * Construct with the given number of bins per dimension
057         * 
058         * @param nbins
059         *            the number of bins in each dimension for the histograms
060         */
061        public HistogramModel(int... nbins) {
062                super(nbins.length);
063
064                assert (nbins.length > 0);
065
066                histogram = new MultidimensionalHistogram(nbins);
067        }
068
069        @Override
070        public void estimateModel(MBFImage... images) {
071                reset();
072                for (final MBFImage im : images) {
073                        accum(im);
074                }
075                histogram.normalise();
076        }
077
078        protected void reset() {
079                for (int i = 0; i < histogram.values.length; i++)
080                        histogram.values[i] = 0;
081        }
082
083        /**
084         * For a given index, map to the range of colours which could map to it
085         * 
086         * @param index
087         * @return start/end colour
088         */
089        public Pair<float[]> colourRange(int index) {
090                final int[] coord = this.histogram.getCoordinates(index);
091                final float[] start = new float[coord.length];
092                final float[] end = new float[coord.length];
093                final int[] nbins = histogram.nbins;
094                for (int i = 0; i < coord.length; i++) {
095                        start[i] = (float) coord[i] / (float) nbins[i];
096                        end[i] = ((float) coord[i] + 1) / nbins[i];
097                }
098                return new Pair<float[]>(start, end);
099        }
100
101        /**
102         * For a given index, get the average colour which would map to it
103         * 
104         * @param index
105         * @return start/end colour
106         */
107        public float[] colourAverage(int index) {
108                final int[] coord = this.histogram.getCoordinates(index);
109                final float[] average = new float[coord.length];
110                final int[] nbins = histogram.nbins;
111                for (int i = 0; i < coord.length; i++) {
112                        final float start = (float) coord[i] / (float) nbins[i];
113                        final float end = ((float) coord[i] + 1) / nbins[i];
114                        average[i] = (start + end) / 2f;
115                }
116
117                return average;
118        }
119
120        protected void accum(MBFImage im) {
121                final int height = im.getHeight();
122                final int width = im.getWidth();
123                final int[] bins = new int[ndims];
124
125                final float[][][] bands = new float[im.numBands()][][];
126                for (int i = 0; i < bands.length; i++)
127                        bands[i] = im.getBand(i).pixels;
128
129                final int[] nbins = histogram.nbins;
130                final double[] values = histogram.values;
131
132                for (int y = 0; y < height; y++) {
133                        for (int x = 0; x < width; x++) {
134                                for (int i = 0; i < ndims; i++) {
135                                        bins[i] = (int) (bands[i][y][x] * (nbins[i]));
136                                        if (bins[i] >= nbins[i])
137                                                bins[i] = nbins[i] - 1;
138                                }
139
140                                int bin = 0;
141                                for (int i = 0; i < ndims; i++) {
142                                        int f = 1;
143                                        for (int j = 0; j < i; j++)
144                                                f *= nbins[j];
145
146                                        bin += f * bins[i];
147                                }
148
149                                values[bin]++;
150                        }
151                }
152        }
153
154        @Override
155        public String toString() {
156                return histogram.toString();
157        }
158
159        @Override
160        public HistogramModel clone() {
161                final HistogramModel model = new HistogramModel();
162                model.histogram = histogram.clone();
163                model.ndims = ndims;
164                return model;
165        }
166
167        @Override
168        public MultidimensionalHistogram getFeatureVector() {
169                return histogram;
170        }
171}